Monday 16 March 2009

Change of Name of Blog

Today the name of this blog has changed from "Search for ET" to "Search for ET and the Origin of Life" to reflect my dual interests.

Second Genesis: The search for shadow life

  • 13 March 2009
  • Magazine issue 2699. Subscribe and get 4 free issues.
  • For similar stories, visit the Astrobiology Topic Guide

See a gallery of possible forms of shadow life

While some researchers are attempting to create brand new life in the lab, others are searching for alien life on Mars and, eventually, elsewhere in the solar system. This burgeoning field of astrobiology has a less well-known offshoot right here on Earth: the search for a "shadow biosphere"- a second, independent form of life unrelated to sort we know (Astrobiology, vol 5, p 154).

After all, many astrobiologists now think that given the right conditions any sufficiently complex molecular soup has a good chance of generating life if it simmers long enough. If that's so, it seems plausible that life may have arisen on Earth not once, but several times. New origins of life are unlikely today, because existing life would gobble up any aggregations of prebiotic molecules before they could edge over the threshold. However, opportunities for the origin of life may well have existed for long periods on the early Earth. Some of these origins may have been dead ends, out-competed by other life forms - but others could still be living among us, unnoticed.

As big as Darwin

"I think if we found a second sample of life on Earth, it would be as big as Darwin's theory of evolution," says cosmologist and astrobiologist Paul Davies at Arizona State University in Tempe. "It would answer the most fundamental question we can imagine, which is: are we alone in the universe?"

Sceptics might scoff that shadow life could pass unrecognised for so long, but Davies and his collaborators have a simple rejoinder: we've never looked properly. Such life would probably take the form of single-celled microbes, so we would not expect naturalists to spot it casually like some rare parrot. And the techniques microbiologists use to detect life - staining for DNA, sequencing DNA, and culturing microbes in the lab - assume that the target microbes have the normal biochemistry.

"They couldn't detect an alternative form of microbial life," says Carol Cleland, a philosopher of science and astrobiologist at the University of Colorado in Boulder. Given that fewer than 1 per cent of microbes have been cultured and described, there is plenty of room for shadow life to be living right under our noses.

However, the task of searching for shadow life on Earth is much tougher than looking for life on other planets. "This planet is heavily contaminated with life as we know it," says Shelley Copley, a biochemist at the University of Colorado. That means researchers can't just look for evidence of metabolism or the presence of large biopolymers, because ordinary life would swamp any signal from shadow life. Instead, shadow-stalkers have to get more creative.

One promising avenue is to explore extreme environments that are beyond the reach of conventional life, such as ultra-dry deserts, ice sheets, the upper atmosphere or the hottest hydrothermal vents (see The most extreme life-forms in the universe)

Another is to devise ways of detecting alternative biochemistries. In the first and so-far only experiment of this kind, Richard Hoover, a microbiologist at NASA's National Space Science and Technology Center in Huntsville, Alabama, went looking for "mirror life". Normal organisms use right-handed sugars and left-handed amino acids almost exclusively, and eschew their mirror-image equivalents. But what if shadow life developed the opposite preference? Hoover and his colleague Elena Pikuta created nutrient broths containing only left-handed sugars and right-handed amino acids, inoculated them with unusual extremophile microbes and waited to see if anything grew.

"Much to our great astonishment, we found that we did have some microorganisms that were capable of growing," Hoover recalls. But on closer examination, the shadow microbes turned out to be ordinary bacteria with unusual metabolisms.

Cleland thinks there are other places to look. "What I think we should do is go out looking for anomalies," she says. For example, some researchers have reported nanobacteria which show some of the characteristics of life but are too small to be ordinary cells.

An even more promising anomaly, Cleland says, is "http://www.imperial.ac.uk/P7911.htm desert varnish" - a thin, manganese-rich layer that forms on the surface of rocks, especially in hot, dry places. "Everyone thinks they know what desert varnish is, but everyone disagrees," says Cleland. "There is no agreement on whether it is produced by living or nonliving processes." The layered varnish looks a lot like the primitive microbial mats called stromatolites, but for the most part, microbes are absent. Bacteria-like objects are occasionally present, but have never been fully characterised. "What they really are, I have no idea," says Ronald Dorn, a who studies rock varnish at Arizona State University.

In September 2008, Cleland and her colleagues took samples of desert varnish. They hope to find unusual ratios of elements that might point to some sort of metabolic process, but with a signature that differs from that of familiar life. They hope to have some results later this year.

Not likely, says Norman Pace, a microbiologist at the University of Colorado who is one of the researchers Cleland has recruited to examine the desert varnish. "The only reason to invoke [shadow life] is that we don't know what causes desert varnish," he says. Still, he's willing to have a look.

Davies hopes that more researchers will start looking for shadow life. Even if they don't find it, the search could turn up previously unknown branches on the familiar tree of life. "So it's worth doing anyway," he concludes, "even if you've convinced yourself that we're alone in the universe."